
Publications by author
This page lists selected publications coauthored by the members of the BioIntelligence Lab, including their publications at various institutions and the ones written before joining the lab. Please see the papers for more information.
Krisztian Buza
K. Buza, L. Peska, J. Koller (2020): Modified linear regression predicts drugtarget interactions accurately, PLoS ONE 15(4): e0230726.
K. Buza (2020): ASTERICS: Projectionbased Classification of EEG with Asymmetric Loss Linear Regression and Genetic Algorithm, 14th International Symposium on Applied Computational Intelligence and Informatics, IEEE
K. Buza, L. Peska (2019): Individualized Warping Window Size for Dynamic Time Warping, [Paper] [Poster] Time Series Workshop at the 36th International Conference on Machine Learning, Long Beach, USA
K. Buza, T. Horváth (2019): Factorization Machines for Blog Feedback Prediction, Proceedings of the 11th International Conference on Computer Recognition Systems (CORES), Springer. [Paper] [Poster]
K. Buza, T. Horváth (2019): The role of warping window size in case of EEG classification, [pdf] [Slides] Clinical Neurophysiology, Volume 130, Issue 7, page e34
K. Buza, T. Horváth (2019): EEG Classification: The Warping Window Size Does Not Matter That Much, XI. Dubrovnik Conference on Cognitive Science (DUCOG), poster
K. Buza (2018): Time Series Classification and its Applications, invited tutorial at the 8th International Conference on Web Intelligence, Mining and Semantics. [Paper] [Slides]
A. Szenkovits, R. Meszlényi, K. Buza, N. Gaskó, R.I. Lung, M. Suciu (2018): Feature Selection with a Genetic Algorithm for Classification of Brain Imaging Data, in U. Stanczyk, B. Zielosko, L.C. Jain: Advances in Feature Selection for Data and Pattern Recognition, Springer
K. Buza, L. Peska (2017): Drugtarget interaction prediction with Bipartite Local Models and hubnessaware regression, [Preprint] [Audio Slides] Neurocomputing, Volume 260, pp. 284293
K. Buza, L. Peska (2017): ALADIN: A New Approach for DrugTarget Interaction Prediction, European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECMLPKDD), Springer. [Supplementary experiments  XLSX] [Paper] [Poster] [Slides]
L. Peska, K. Buza, J. Koller (2017): Drugtarget interaction prediction: A Bayesian ranking approach [Preprint] [Supplementary material], Computer Methods and Programs in Biomedicine, Vol. 152, pp. 1521
Regina J. Meszlényi, Krisztian Buza, Zoltán Vidnyánszky (2017): Resting State fMRI Functional ConnectivityBased Classification Using a Convolutional Neural Network Architecture, Frontiers in Neuroinformatics, Vol. 11
Regina J. Meszlényi, Petra Hermann, Krisztian Buza, Viktor Gál, Zoltán Vidnyánszky (2017): Resting State fMRI Functional Connectivity Analysis Using Dynamic Time Warping, Frontiers in Neuroscience, Vol. 11
D. Neubrandt, K. Buza (2017): Projectionbased Person Identification, Proceedings of the 10th International Conference on Computer Recognition Systems (CORES), Springer. [ipynb] [Ipython Notebook in HTML]
K. Buza, Piroska B. Kis (2017): Towards Privacyaware Keyboards, Proceedings of the 10th International Conference on Computer Recognition Systems (CORES), Springer. [video]
Regina Meszlényi, Ladislav Peska, Viktor Gal, Zoltán Vidnyánszky, Krisztian Buza (2016): A model for classification based on the functional connectivity pattern dynamics of the brain, The Third European Network Intelligence Conference (ENIC 2016)
Regina Meszlényi, Ladislav Peska, Viktor Gal, Zoltán Vidnyánszky, Krisztian Buza (2016): Classification of fMRI data using Dynamic Time Warping based functional connectivity analysis, 24th European Signal Processing Conference (EUSIPCO)
Rodica Ioana Lung, Mihai Suciu, Regina Meszlényi, Krisztian Buza, Noémi Gaskó (2016): Community structure detection for the functional connectivity networks of the brain, 14th International Conference on Parallel Problem Solving from Nature
K. Buza, N.Á. Varga (2016): ParkinsoNET: Estimation of UPDRS Score using Hubnessaware FeedForward Neural Networks, Applied Artificial Intelligence, special issue on Intelligent methods applied to healthcare information systems
K. Buza (2016): Person Identification Based on Keystroke Dynamics: Demo and Open Challenge , 28th International Conference on Advanced Information Systems Engineering (CAiSE'16) Forum See also: Person Identification Challenge
K. Buza, D. Neubrandt (2016): How You Type Is Who You Are, 11th International Symposium on Applied Computational Intelligence and Informatics, IEEE
K. Buza (2016): DrugTarget Interaction Prediction with Hubnessaware Machine Learning, 11th International Symposium on Applied Computational Intelligence and Informatics, IEEE
K. Buza (2016): Classification of Gene Expression Data: A Hubnessaware SemiSupervised Approach,[Audio Slides] Computer Methods and Programs in Biomedicine
K. Buza, J. Koller (2016): Classification of Electroencephalograph Data: A Hubnessaware Approach, Acta Polytechnica Hungarica
N. Tomasev, K. Buza, D. Mladenic (2016): Correcting the Hub Occurrence Prediction Bias in Many Dimensions, Computer Science and Information Systems
K. Buza, D. Neubrandt (2016): A New Proposal for Person Identification Based on the Dynamics of Typing: Preliminary Results, Theoretical and Applied Informatics, Vol. 28, No. 12
K. Buza, A. Nanopoulos, G. Nagy (2015): Nearest Neighbor Regression in the Presence of Bad Hubs [Preprint] [Audio Slides], KnowledgeBased Systems, Volume 86, pp. 250260
N. Tomasev, K. Buza (2015): Hubnessaware kNN Classification of Highdimensional Data in Presence of Label Noise, [Preprint] [Audio Slides] Neurocomputing, Volume 160, pp. 157172
K. Buza, J. Koller, K. Marussy (2015): PROCESS: ProjectionBased Classification of Electroencephalograph Signals [paper] [poster], ICAISC, LNCS Vol. 9120, pp. 91100, Springer.
K. Buza (2015): Semisupervised Naive HubnessBayesian kNearest Neighbor for Gene Expression Data, Proceedings of the 9th International Conference on Computer Recognition Systems (CORES), Springer. CORES Award
K. Buza, B. Wilczynski, N. Dojer (2015): RECORD: ReferenceAssisted Genome Assembly for Closely Related Genomes, International Journal of Genomics
K. Buza, N. A. Varga (2015): Machine Learning for the Estimation of UPDRS score, VII. Dubrovnik Conference on Cognitive Science (DUCOG), poster
K. Buza (2015): Hubness: An Interesting Property of Nearest Neighbor Graphs and its Impact on Classification, 9th JapaneseHungarian Symposium on Discrete Mathematics and Its Applications, Invited talk
K. Marussy, L. Peška, K. Buza (2015): Recommendations of Unique Items Based on Bipartite Graphs, 9th JapaneseHungarian Symposium on Discrete Mathematics and Its Applications
N. Tomasev, K. Buza, K. Marussy, P.B. Kis (2015): Hubnessaware Classification, Instance Selection and Feature Construction: Survey and Extensions to TimeSeries, In: U. Stanczyk, L. Jain (eds.), Feature selection for data and pattern recognition, SpringerVerlag
K. Buza, G. Nagy, A. Nanopoulos (2014): StorageOptimizing Clustering Algorithms for HighDimensional Tick Data, Expert Systems with Applications, 41, pp. 41484157.
K. Marussy, K. Buza (2014): PROGRESS: ProjectionBased Gene Expression Classification, Innovations in Medicine Conference (poster)
K. Buza, G. I. Nagy, A. Nanopoulos (2014): Trend analysis and anomaly detection in time series of language usage, VI. Dubrovnik Conference on Cognitive Science (DUCOG), poster
K. Buza, G. I. Nagy, A. Nanopoulos (2014): Three Open Questions related to the Tick Data Decomposition Problem, Summit240 Conference, abstract
Krisztian Buza (2014): Feedback Predicition for Blogs, [paper] [Data used for the experiments in the paper] [presentation slides] The 36th Annual Conference of the German Classification Society on Data Analysis, Machine Learning and Knowledge Discovery August 13, 2012, Hildesheim, Germany
K. Buza, K. Marussy (2014): Aspects of Complexity in Data Analysis Tasks  Some UseCases, Workshop on Mining Complex Data, 2527th October, 2014, Kosice, Slovakia
K. Marussy, K. Buza (2013): SUCCESS: A New Approach for SemiSupervised Classification of TimeSeries, ICAISC, LNCS Vol. 7894, pp. 437447, Springer. The original publication is available at www.springerlink.com.
K. Buza, J. Koller (2013): Speeding up the classification of biomedical signals via instance selection, [poster] [abstract], 5th Dubrovnik Conference on Cognitive Science, Learning & Perception, 5:(Suppl 1).
K. Buza, I. Galambos (2013): An Application of Link Prediction in Bipartite Graphs: Personalized Blog Feedback Prediction, 8th JapaneseHungarian Symposium on Discrete Mathematics and Its Applications
F. Bodon, K. Buza (2013): Adatbányászat [Data Mining], Electronic textbook in Hungarian
K. Marussy, K. Buza (2013): Hubnessbased indicators for semisupervised timeseries classification, 8th JapaneseHungarian Symposium on Discrete Mathematics and Its Applications
K. Buza, B. Wilczynski, N. Dojer (2013): A Simple and Effective Technique for Assisted Genome Assembly, 21st Annual International Conference on Intelligent Systems for Molecular Biology & 12th European Conference on Computational Biology, poster
G.I. Nagy, K. Buza (2012): Efficient Storage of Tick Data That Supports Search and Analysis, [paper] [presentation slides], 12th Industrial Conference on Data Mining, Berlin, LNCS Vol. 7377, pp. 3851, Springer. Nominated for the Best Paper Award.The original publication is available at www.springerlink.com.
K. Buza, A. Nanopoulos, T. Horváth, L. SchmidtThieme (2012): GRAMOFON: General Modelselection Framework based on Networks, Neurocomputing, Volume 75, Issue 1, pp. 163170, Elsevier
G.I. Nagy, K. Buza (2012): Clustering Algorithms for Storage of Tick Data, The 36th Annual Conference of the German Classification Society on Data Analysis, Machine Learning and Knowledge Discovery August 13, 2012, Hildesheim, Germany
G.I. Nagy, K. Buza (2012): Partitional Clustering of Tick Data to Reduce Storage Space, IEEE 16th International Conference on Intelligent Engineering Systems
K. Buza, A. Buza, P.B. Kis (2011): A Distributed Genetic Algorithm for GraphBased Clustering, [paper] [presentation slides] ManMachine Interactions 2, Advances in Intelligent and Soft Computing, Volume 103/2011, pages 323331, Springer. The original publication is available at www.springerlink.com.
T. Horváth, A. Eckhardt, K. Buza, P. Vojtás, L. SchmidtThieme (2011): Valuetransformation for Monotone Prediction by Approximating Fuzzy Membership Functions, [paper] [poster] 12th IEEE International Symposium on Computational Intelligence and Informatics
K. Buza, A. Nanopoulos, L. SchmidtThieme (2011): INSIGHT: Efficient and Effective Instance Selection for TimeSeries Classification, Proceedings of the 15th PacificAsia Conference on Knowledge Discovery and Data Mining (PAKDD), LNCS Vol. 6635, pages 149160, Springer. The original publication is available at www.springerlink.com.
K. Buza, A. Nanopoulos, L. SchmidtThieme, J. Koller (2011): Fast Classification of Electrocardiograph Signals via Instance Selection, Proceedings of the First IEEE conference on Healthcare Informatics, Imaging and Systems Biology.
K. Buza (2011): Fusion Methods for Time Series Classification, Peter Lang Verlag.
S. Blohm, K. Buza, P. Cimiano, L. SchmidtThieme (2011): Relation Extraction for the Semantic Web with Taxonomic Sequential Patterns, in V. Sugumaran and J.A. Gulla: Applied Semantic Web Technologies, CRC Press, Taylor&Francis Group.
K. Buza, A. Nanopoulos, L. SchmidtThieme (2010): TimeSeries Classification based on Individualised Error Prediction, 13th IEEE International Conference on Computational Science and Engineering (CSE2010). Best Paper Award
Júlia Koller
K. Buza, L. Peska, J. Koller (2020): Modified linear regression predicts drugtarget interactions accurately, PLoS ONE 15(4): e0230726.
L. Peska, K. Buza, J. Koller (2017): Drugtarget interaction prediction: A Bayesian ranking approach [Preprint] [Supplementary material], Computer Methods and Programs in Biomedicine, Vol. 152, pp. 1521
K. Buza, J. Koller (2016): Classification of Electroencephalograph Data: A Hubnessaware Approach, Acta Polytechnica Hungarica
K. Buza, J. Koller, K. Marussy (2015): PROCESS: ProjectionBased Classification of Electroencephalograph Signals [paper] [poster], ICAISC, LNCS Vol. 9120, pp. 91100, Springer.
L.A. Laviolette, J. Wilson, J. Koller, C. Neil, P. Hulick, T. Rejtar, B. Karger, B.T. Teh, O. Iliopoulos (2013): Human folliculin delays cell cycle progression through late S and G2/Mphases: effect of phosphorylation and tumor associated mutations, PLoS One, 8:(7), e66775.
K. Buza, J. Koller (2013): Speeding up the classification of biomedical signals via instance selection, [poster] [abstract], 5th Dubrovnik Conference on Cognitive Science, Learning & Perception, 5:(Suppl 1).
M. Bence, J. Koller, M. SasvariSzekely, G. Keszler (2012): Transcriptional modulation of monoaminergic neurotransmission genes by the histone deacetylase inhibitor trichostatin A in neuroblastoma cells, Journal of Neural Transmission, 119:(1), pp. 1724.
L.A. Laviolette, J. Wilson, J. Koller, M. Zimmer, O. Iliopoulos (2012): Human FLCN delays cell cycle progression through late S and G2/Mphases: Effect of phosphorylation and tumorassociated mutations, Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research, Cancer Research 72:(8 Suppl)
K. Buza, A. Nanopoulos, L. SchmidtThieme, J. Koller (2011): Fast Classification of Electrocardiograph Signals via Instance Selection, Proceedings of the First IEEE conference on Healthcare Informatics, Imaging and Systems Biology.
Noémi Ágnes Varga
K. Buza, N.Á. Varga (2016): ParkinsoNET: Estimation of UPDRS Score using Hubnessaware FeedForward Neural Networks, Applied Artificial Intelligence, special issue on Intelligent methods applied to healthcare information systems
K. Buza, N. A. Varga (2015): Machine Learning for the Estimation of UPDRS score, VII. Dubrovnik Conference on Cognitive Science (DUCOG), poster
Kristóf Marussy
K. Buza, J. Koller, K. Marussy (2015): PROCESS: ProjectionBased Classification of Electroencephalograph Signals [paper] [poster], ICAISC, LNCS Vol. 9120, pp. 91100, Springer.
K. Marussy, L. Peška, K. Buza (2015): Recommendations of Unique Items Based on Bipartite Graphs, 9th JapaneseHungarian Symposium on Discrete Mathematics and Its Applications
N. Tomasev, K. Buza, K. Marussy, P.B. Kis (2015): Hubnessaware Classification, Instance Selection and Feature Construction: Survey and Extensions to TimeSeries, In: U. Stanczyk, L. Jain (eds.), Feature selection for data and pattern recognition, SpringerVerlag
K. Marussy, K. Buza (2014): PROGRESS: ProjectionBased Gene Expression Classification, Innovations in Medicine Conference (poster)
K. Marussy (2014): The Curse of Intrinsic Dimensionality in Genome Expression Classification, Students' Scientific Conference, Budapest University of Technology and Economics, Second prize
K. Buza, K. Marussy (2014): Aspects of Complexity in Data Analysis Tasks  Some UseCases, Workshop on Mining Complex Data, 2527th October, 2014, Kosice, Slovakia
K. Marussy, K. Buza (2013): SUCCESS: A New Approach for SemiSupervised Classification of TimeSeries, ICAISC, LNCS Vol. 7894, pp. 437447, Springer. The original publication is available at www.springerlink.com.
K. Marussy, K. Buza (2013): Hubnessbased indicators for semisupervised timeseries classification, 8th JapaneseHungarian Symposium on Discrete Mathematics and Its Applications
K. Marussy (2012): A new approach for more accurate semisupervised timeseries classification, Students' Scientific Conference, Budapest University of Technology and Economics, Second prize
Dóra Neubrandt
D. Neubrandt, K. Buza (2017): Projectionbased Person Identification, Proceedings of the 10th International Conference on Computer Recognition Systems (CORES), Springer. [ipynb] [Ipython Notebook in HTML]
K. Buza, D. Neubrandt (2016): How You Type Is Who You Are, 11th International Symposium on Applied Computational Intelligence and Informatics, IEEE
K. Buza, D. Neubrandt (2016): A New Proposal for Person Identification Based on the Dynamics of Typing: Preliminary Results, Theoretical and Applied Informatics, Vol. 28, No. 12
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